PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017075-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 484aa    MW: 53831.7 Da    PI: 6.3856
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017075-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.5e-12314359454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  WALNUT_00017075-RA 314 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 359
                         799***********************6.....4***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.7E-5226210IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.015310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-17311373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.42E-14313363No hitNo description
PfamPF000106.6E-10314359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-16314373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-15316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEDLIISPSS SSSLVSNLPQ EAPPTLQQRL QFIVQSQPEW WAYAIFWQTA NDDNGHVFLA  60
WGDGHFHGNK DTSRKLSHSN NTHPIPVLHS ERKNFMRDIQ SMIGESNQDI DNMSINADVS  120
DAEWFYIMSL TRSFSAGEGV PGRAYSTNSL VWLTGGRDLQ FYNCERAKEA QMHGIETLIC  180
IPTSSGVLEM GSPNIIRENW GLAQQAKSLF GTDLVGMLPR QQSPSSGPIQ FLERNISFAD  240
IGIIAGVPGD DNSGEEKKKG AIGGKKQSIK GGQSPYVDSE HSDSDCPLIA LNVEKRTPKK  300
RGRKPGLGRD TPLNHVEAER QRREKLNHRF YALRAVVPNV SRMDKASLLS DAVSYINELK  360
TKIDELESQL QRDSKKVKLE LADTMDNQST TTSVNQTRPN SSGFALEVEV KIVGVDAMIR  420
VQSENVNYPA ARLMCALRDL EFQVHHASMS CVNELMLQDA VVKVPDGLRS EEGLKTALLR  480
RLEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-37192102192Transcription factor MYC3
4rqw_B2e-37192102192Transcription factor MYC3
4rs9_A2e-37192102192Transcription factor MYC3
4yz6_A2e-37192102192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051457.10.0Basic helix-loop-helix DNA-binding family protein
TrEMBLA0A061DS370.0A0A061DS37_THECC; Basic helix-loop-helix DNA-binding family protein
STRINGPOPTR_0002s17750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.11e-76NACL-inducible gene 1